Unit content
Ligand-receptor binding affinity and fractional occupancy
A receptor is a molecule, often a protein, that can bind a particular ligand. Binding creates a receptor-ligand complex and can change receptor activity, but binding itself is first a reversible chemical equilibrium.
For a single binding site,
$$\mathrm{R+L\rightleftharpoons RL}.$$
A useful equilibrium measure is the dissociation constant
$$\boxed{K_d=\frac{[R][L]}{[RL]}}.$$
A smaller $K_d$ corresponds to tighter binding: less free ligand is needed to favor the bound state.
Fractional occupancy
Let the total receptor concentration be
$$[R]_T=[R]+[RL].$$
The fractional occupancy is the fraction of receptors carrying ligand:
$$\theta=\frac{[RL]}{[R]_T}.$$
For one independent binding site, when free ligand is much more abundant than receptor so that $[L]$ is effectively fixed,
$$\boxed{\theta=\frac{[L]}{K_d+[L]}}.$$
This equation has an important interpretation:
- if $[L]\ll K_d$, few receptors are occupied;
- if $[L]=K_d$, $\theta=1/2$;
- if $[L]\gg K_d$, occupancy approaches 1.
Worked example
If a receptor has
$$K_d=10\ \mathrm{nM}$$
and free ligand concentration is
$$[L]=30\ \mathrm{nM},$$
then
$$\theta=\frac{30}{10+30}=0.75.$$
About 75% of receptor sites are occupied.
Occupancy is not the same as response
A cell does not necessarily produce 50% of its maximum response at 50% receptor occupancy. Downstream amplification and saturation can change the relation between receptor binding and biological output.
The reusable distinction is therefore
ligand concentration → receptor occupancy → receptor activity → downstream response
$K_d$ characterizes the binding equilibrium. It does not, by itself, specify the magnitude or time course of the cellular response.